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[[IT memo]]

*Setting up isotope.ccsr.u-tokyo.ac.jp [#c016b9ad]
#contents

**specification [#b24819eb]
 Name: isotope
 IP: 157.82.233.153
 Body: HP Z600
 CPU: Xeon E5520 (2.26GHz, quad core) x2
 RAM: 6GB
 HDD: 1TB x2
 OS: RedHat Enterprise Linux 5 (Server)

** RHEL 5.4 [#za3ad3c1]
Multi languages and Developer's tools can be installed later by "Applications" -> "Add/Remove Software" -> "Languages" or "Development".
** softwares [#s2287c48]

*** Intel compilers (11.1) [#yb4e4f32]
http://software.intel.com/en-us/articles/non-commercial-software-download/ からIntel® Compiler Suite Professional Edition for Linuxを選び、ダウンロード。解凍後
、install.shを起動する。
*** MPICH1.2.7 [#cab5efe7]
 ./configure --enable-debug --prefix=/usr/local/mpich -rsh=/usr/bin/ssh
 make
 su
 make install
-$MPICHDIR/exampleのhello++.ccのコンパイルでなぜか止まるが、実用上は問題なし。
-$HOME/.ssh/authorized_keysに$HOME/.ssh/id_rsa.pubもしくはid_dsa.pubを追加しておくことが必要。

*** NetCDF4.0.1 [#r6ddfa36]
 $ setenv FC ifort
 $ setenv CC icc
 $ setenv CXX icc
 $ setenv CPPFLAGS -DpgiFortran
 $ ./configure --prefix=/usr/local/netcdf
 $ make
 $ su
 # make install

*** DCL-5.3.3 [#i97d02b9]
 $ wget http://www.gfd-dennou.org/arch/dcl/dcl-5.3.3.tar.gz
 $ tar xvfz dcl-5.3.3.tar.gz
 $ cd dcl-5.3.3
 $ setenv FC ifort
 $ setenv CC gcc
 $ setenv DCLDIR-/usr/local/dcl-5.3.3
 $ ./configure --prefix=/usr/local/dcl-5.3.3 --disable-gtk --disable-gtk2
 $ make
 $ su
 # make install ; exit
 $ cd demo
 $ make
 $ cd gokuraku/hop ; hop

*** gtool3.5 [#ef1fcd84]
See http://meteora.ucsd.edu/~kyoshimura/?IT%20memo%2Flinuxmemo#i646c739

*** udunits-1.12.11 -> /usr/local [#k1cf917c]
needed for GT-GrADS
 wget ftp://ftp.unidata.ucar.edu/pub/udunits/udunits-1.12.11.tar.gz
 tar xvfz udunits-1.12.11.tar.gz
 cd udunits-1.12.11/src
 setenv PERL
 ./configure
 make
 make install

*** udunits-2.1.19 -> /usr/local [#k374701b]
 wget ftp://ftp.unidata.ucar.edu/pub/udunits/udunits-2.1.19.tar.gz
 cd udunits-2.1.19
 configure
 make 
 make install

*** netcdf-3.6.3 -> /usr/local [#r35aa3fe]
needed for GT-GrADS
 wget ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-3.6.3.tar.gz
 tar xvfz netcdf-3.6.3.tar.gz
 cd netcdf-3.6.3
 ./configure
 make
 make check
 make install

*** libgtool3-0.15.3 -> /usr/local [#ucfd9834]
needed for GT-GrADS
 Obtain from kmt server (or shui)
 configure
 make
 make install

*** GT-GrADS -> /home/kei/GT-GrADS [#v7f69bfa]
 Obtain from kmt server (or shui)
 ./configure --prefix=/home/kei/GT-GrADS GRADS_DATADIR=/home/kei/GrADS/data configure 
 make 
 make install