Backup of IT memo/linuxmemo2 (No. 5)

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  • 10 (2011-04-26 (Tue) 10:29:10)

IT memo

Setting up isotope.ccsr.u-tokyo.ac.jp †

specification †

Name: isotope
IP: 157.82.233.153
Body: HP Z600
CPU: Xeon E5520 (2.26GHz, quad core) x2
RAM: 6GB
HDD: 1TB x2
OS: RedHat Enterprise Linux 5 (Server)

RHEL 5.4 †

Multi languages and Developer's tools can be installed later by "Applications" -> "Add/Remove Software" -> "Languages" or "Development".

softwares †

Intel compilers (11.1) †

http://software.intel.com/en-us/articles/non-commercial-software-download/ からIntel® Compiler Suite Professional Edition for Linuxを選び、ダウンロード。解凍後 、install.shを起動する。

MPICH1.2.7 †

./configure --enable-debug --prefix=/usr/local/mpich -rsh=/usr/bin/ssh
make
su
make install

• $MPICHDIR/exampleのhello++.ccのコンパイルでなぜか止まるが、実用上は問題なし。
• $HOME/.ssh/authorized_keysに$HOME/.ssh/id_rsa.pubもしくはid_dsa.pubを追加しておくことが必要。

NetCDF4.0.1 †

$ setenv FC ifort
$ setenv CC icc
$ setenv CXX icc
$ setenv CPPFLAGS -DpgiFortran
$ ./configure --prefix=/usr/local/netcdf
$ make
$ su
# make install

DCL-5.3.3 †

$ wget http://www.gfd-dennou.org/arch/dcl/dcl-5.3.3.tar.gz
$ tar xvfz dcl-5.3.3.tar.gz
$ cd dcl-5.3.3
$ setenv FC ifort
$ setenv CC gcc
$ setenv DCLDIR-/usr/local/dcl-5.3.3
$ ./configure --prefix=/usr/local/dcl-5.3.3 --disable-gtk --disable-gtk2
$ make
$ su
# make install ; exit
$ cd demo
$ make
$ cd gokuraku/hop ; hop

gtool3.5 †

See http://meteora.ucsd.edu/~kyoshimura/?IT%20memo%2Flinuxmemo#i646c739