IT memo/Compas Memo
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* Memo for compas.ucsd.edu [#i630b64c]
- Specification:
-- 160 nodes, 320 CPUs cluster.
-- 5 racks, 0-1: P4 with myrinet, 2-3: P3 with myrinet, 4...
-- 2GB memory for one node.
** Note for GSM/RSM run [#kb28dea3]
Should change compilers in libs/opt_libs/options-linux-mp...
-rack0-1: mpif90
-rack2-3: mpif90_PIII
-rack4:
** Using Myrinet (rack 2&3) [#na6d5851]
- With Myrinet: Make path to /opt/mpich/myrinet/pgi/bin
- Without Myrinet (GigE): Make path to /opt/mpich/pgi/bin
-- In this case, the node_list should be like "compas-3-0...
** How to run GSM from first login [#z8fc122f]
+ ssh to compas
$ ssh -l kei compas
You are asked to make specific pass phrases,
but Do not make them and just hit enter.
+ set your environment
modify ~/.bashrc (bash) or ~/.cshrc (tcsh)
PATH, LD_LIBRARY_PATH, LM_LICENSE_FILE, CVSROOT are imp...
+ install GSM
$ mkdir GSM ; cd GSM
$ install --model=gsm --date=20061218 lo
choose mpi, T62, gsm
+ re-compile GSM-libs
$ cd libs
modify opt_libs/options-linux-mpi
all "pgf90" -> "mpif90_PIII" (when you use compute-3-XX)
$ configure-libs
$ make clean ; make
+ re-compile GSM
$ cd gsm
modify opt/options-linux-mpi
all "pgf90" -> "mpif90_PIII"
$ configure-models
$ make clean ; make
+ make "node_list"
edit ~/node_list (in your home directory)
compute-3-16
compute-3-16
compute-3-17
compute-3-17
:
compute-3-31
+ test run!
$ cd gruns
$ gsm
End:
* Memo for compas.ucsd.edu [#i630b64c]
- Specification:
-- 160 nodes, 320 CPUs cluster.
-- 5 racks, 0-1: P4 with myrinet, 2-3: P3 with myrinet, 4...
-- 2GB memory for one node.
** Note for GSM/RSM run [#kb28dea3]
Should change compilers in libs/opt_libs/options-linux-mp...
-rack0-1: mpif90
-rack2-3: mpif90_PIII
-rack4:
** Using Myrinet (rack 2&3) [#na6d5851]
- With Myrinet: Make path to /opt/mpich/myrinet/pgi/bin
- Without Myrinet (GigE): Make path to /opt/mpich/pgi/bin
-- In this case, the node_list should be like "compas-3-0...
** How to run GSM from first login [#z8fc122f]
+ ssh to compas
$ ssh -l kei compas
You are asked to make specific pass phrases,
but Do not make them and just hit enter.
+ set your environment
modify ~/.bashrc (bash) or ~/.cshrc (tcsh)
PATH, LD_LIBRARY_PATH, LM_LICENSE_FILE, CVSROOT are imp...
+ install GSM
$ mkdir GSM ; cd GSM
$ install --model=gsm --date=20061218 lo
choose mpi, T62, gsm
+ re-compile GSM-libs
$ cd libs
modify opt_libs/options-linux-mpi
all "pgf90" -> "mpif90_PIII" (when you use compute-3-XX)
$ configure-libs
$ make clean ; make
+ re-compile GSM
$ cd gsm
modify opt/options-linux-mpi
all "pgf90" -> "mpif90_PIII"
$ configure-models
$ make clean ; make
+ make "node_list"
edit ~/node_list (in your home directory)
compute-3-16
compute-3-16
compute-3-17
compute-3-17
:
compute-3-31
+ test run!
$ cd gruns
$ gsm
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